License/Disclaimer
The following is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; either version 2
of the License, or (at your option) any later version.
SpLip: A program to predict lipoproteins in
spirochetal genomes in silico.
SpLip Home
If you find this tool useful please cite:
J. C. Setubal, M. Reis, J. Matsunaga, and D. Haake. Lipoprotein
Computational Prediction in Spirochetal Genomes. Microbiology,
152:113--121, 2006.
Supplemental data for the above paper
Genscaff: This tool builds DNA sequence scaffolds
that help in bacterial genome assembly. It assumes some preprocessing
with a genome assembly program, such as phrap.
If you find this tool useful please cite:
J. C. Setubal and R. Werneck. A program for building contig
scaffolds in double-barrelled shotgun genome sequencing. Institute of
Computing Technical report IC-01-05, Unicamp, 2001. (This technical
report containing complete documentation for genscaff is part of the
tar file hyperlinked above.)
Bipartite matching and unit capacity maximum flow
codes .
If you find this tool useful please cite:
B. V. Cherkassky, A. V. Goldberg, P. Martin, J. C. Setubal, and
J. Stolfi. Augment or Push? A computational study of Bipartite
Matching and Unit Capacity Maximum Flow Algorithms. ACM
Journal of Experimental Algorithmics, Volume 3, Article 8,
1998.
(This tool is in the field of combinatorial optimization, and has no direct link to bioinformatics)